Summary

Pure dependency bump across the workspace, plus a small CLI codegen runtime fix that is required to unblock lerna publish / prepack on the @agentic-db/cli package. No other code changes — only package.json specifiers, the resulting pnpm-lock.yaml churn, and sdk/cli/generated/cli/embedder.ts.

Versions moved:

Headliner: the graphile-* and postgraphile family finally graduates from RC tags to stable (5.0.0 / 5.0.1 / 1.0.1). Pinned in the root pnpm overrides block so transitive resolution collapses onto one copy.

Additional fix — unblock prepack tsc on @agentic-db/cli

Running lerna publish failed on @agentic-db/cli's prepack (makage build → tsc) with 74 TS2345 errors across all 37 generated generated/cli/commands/*.ts files, e.g.:

generated/cli/commands/activity-log.ts:128:49 - error TS2345:
  Argument of type 'ActivityLogFilter' is not assignable to parameter of
  type 'Record<string, unknown>'. Index signature for type 'string' is
  missing in type 'ActivityLogFilter'.

128   findManyArgs.where = await autoEmbedWhere(findManyArgs.where ?? {}, ['embedding'], embedder);

The upstream CLI codegen (@constructive-io/graphql-codegen@4.30.1) emits calls like
autoEmbedWhere(findManyArgs.where ?? {}, [...], embedder) and
autoEmbedInput(cleanedData, [...], embedder) where the first argument is a concrete
*Filter / *Patch type, but the runtime helpers were typed to accept
Record<string, unknown>. Generated filter/patch types don't have a string index
signature, so every call site errored under strict tsc. CI is green because the
orm-tests / cli-e2e-tests / rag-tests jobs go through ts-jest, which is
lenient about index-signature / excess-property checks — only the publish build
runs strict tsc.

Fix in sdk/cli/generated/cli/embedder.ts: make both helpers generic and cast to
Record<string, unknown> internally for field-name indexing. Runtime behavior is
unchanged (mutation in place, same return semantics).

// before
export async function autoEmbedWhere(
  where: Record<string, unknown>, …
): Promise<Record<string, unknown>>

// after
export async function autoEmbedWhere<T extends object>(
  where: T, …
): Promise<T>

sdk/cli now builds cleanly (tsc CJS + ESM), and sdk/sdk is unaffected. The
long-term home for this fix is the upstream @constructive-io/graphql-codegen
embedder.ts template (graphql/codegen/src/core/codegen/templates/embedder.ts);
I'll file a follow-up PR against constructive-io/constructive so the next
regen replaces this patched file with an equivalently-typed one.

Updates since last revision

• Rebased onto main (PR docs+test(readme): combined unifiedSearch + nearbyPlaces ORM example backed by a real integration test #28 landed); regenerated pnpm-lock.yaml from the merged package.json specifiers.
• Added the autoEmbedWhere / autoEmbedInput generic fix above so lerna publish can complete prepack on @agentic-db/cli.

Review & Testing Checklist for Human

• pnpm-lock.yaml diff is large because almost every graphile-config / graphile-build coordinate in transitive peer hashes re-keyed. Spot-check that the lockfile has exactly one resolved version per package (no duplicate RC + stable copies). Searching for 5.0.0-rc should return zero hits outside of the grafast / @dataplan/* / pg-sql2 / tamedevil overrides that we're deliberately still pinning to RC.
• Version-identity traps across workspaces — all five pgsql-test consumers are now on ^4.9.0 and both graphile-settings consumers are on 4.21.1, but worth eyeballing in case one was missed.
• Pre-existing pnpm build TypeScript errors in packages/provision are NOT caused by this PR. Confirmed by stashing the bumps and re-running build on the same commit — identical errors ('ref' / 'table_ref' / 'source_ref' not on BlueprintTable / BlueprintIndex / BlueprintRelation). It's a drift between packages/provision/src/schemas/*.ts and the node-type-registry@0.16.0 type definitions. Separate cleanup; please don't block this PR on it.
• Generated file edited by hand (sdk/cli/generated/cli/embedder.ts) — next pnpm generate:all will overwrite this unless the upstream template is fixed first. Tracked as a follow-up in constructive-io/constructive.

Test plan

1. CI — all 7 jobs should remain green (the embedder fix is type-only; runtime semantics unchanged).
2. cd sdk/cli && pnpm build — reproduces the 74 TS2345 errors before the fix; compiles cleanly after.
3. Local sanity: pnpm install && pnpm -C packages/agentic-db exec jest — the unified-search + spatial tests are the thinnest layer over the bumped plugin stack.

Notes

• @constructive-io/node@0.10.2 is just a re-export of @constructive-io/sdk@0.14.2; same public surface.
• Did not touch grafast / @dataplan/json / @dataplan/pg / pg-sql2 / tamedevil overrides — they're still on RC tags because that's what the rest of the ecosystem is pinning.
• graphile-worker was already on ^0.16.6 (latest); no change needed.
• node-type-registry was already on ^0.16.0 (latest); no change needed.

Link to Devin session: https://app.devin.ai/sessions/fabecb6a46504fc293feca22d9cc91d4
Requested by: @pyramation